drugbank-search

Q: How do I install drugbank-search?

Run npx skills add https://github.com/yorkeccak/scientific-skills --skill drugbank-search in your project. The skills CLI detects the agents you use and copies the skill into the right folder. For Claude Code you can also place the skill folder at ~/.claude/skills/drugbank-search/ (personal) or .claude/skills/drugbank-search/ (project).

by yorkeccakData & Databases

Search DrugBank comprehensive drug database with natural language queries. Drug mechanisms, interactions, and safety data powered by Valyu.

Installs: 132
Last 24h: —
Trending rank: —
Security: Not audited

Install

Works with every agent the skills CLI supports.

npx skills add https://github.com/yorkeccak/scientific-skills --skill drugbank-search

01
Install
Run the command in your project. The CLI asks which agents to install for.
02
Describe the task
Ask your agent for something this skill covers. It loads drugbank-search automatically when relevant.
03
Review the result
The agent follows the SKILL.md steps, scripts and references bundled with the skill.

SKILL.md

The instructions your agent reads when the skill is triggered.

DrugBank Search

Search the complete DrugBank database of drug information including mechanisms of action, interactions, targets, and pharmacology using natural language queries powered by Valyu's semantic search API.

Why This Skill is Powerful

No API Parameter Parsing: Just pass natural language queries directly - no need to construct complex search parameters
Semantic Search: Understands the meaning of your query, not just keyword matching
Full-Text Access: Returns complete drug information including mechanisms, interactions, and targets
Image Links: Includes molecular structures and data visualizations
Comprehensive Coverage: Access to all DrugBank drug data

Requirements

Node.js 18+ (uses built-in fetch)
Valyu API key from https://platform.valyu.ai ($10 free credits)

CRITICAL: Script Path Resolution

The scripts/search commands in this documentation are relative to this skill's installation directory.

Before running any command, locate the script using:

DRUGBANK_SCRIPT=$(find ~/.claude/plugins/cache -name "search" -path "*/drugbank-search/*/scripts/*" -type f 2>/dev/null | head -1)

Then use the full path for all commands:

$DRUGBANK_SCRIPT "ACE inhibitors" 15

API Key Setup Flow

When you run a search and receive "setup_required": true, follow this flow:

Ask the user for their API key: "To search DrugBank, I need your Valyu API key. Get one free ($10 credits) at https://platform.valyu.ai"
Once the user provides the key, run:
```
scripts/search setup <api-key>
```
Retry the original search.

When to Use This Skill

Comprehensive drug information lookup
Drug interactions and side effects research
Target identification and validation
Mechanism of action studies
Pharmacokinetics and pharmacodynamics research
Drug metabolism and adverse event data

Output Format

{
  "success": true,
  "type": "drugbank_search",
  "query": "ACE inhibitors",
  "result_count": 10,
  "results": [
    {
      "title": "Drug Name",
      "url": "https://drugbank.com/...",
      "content": "Drug information, mechanism, interactions...",
      "source": "drugbank",
      "relevance_score": 0.95,
      "images": ["https://example.com/structure.png"]
    }
  ],
  "cost": 0.025
}

Processing Results

With jq

# Get drug names
scripts/search "query" 10 | jq -r '.results[].title'

# Get URLs
scripts/search "query" 10 | jq -r '.results[].url'

# Extract full content
scripts/search "query" 10 | jq -r '.results[].content'

Common Use Cases

Drug Information

# Find drug details
scripts/search "metformin pharmacokinetics" 50

Drug Interactions

# Search for interactions
scripts/search "CYP3A4 inhibitor drug interactions" 20

Mechanism Research

# Find mechanism data
scripts/search "selective serotonin reuptake inhibitors mechanism" 15

Target Identification

# Search for drug targets
scripts/search "drugs targeting BCR-ABL fusion protein" 25

Error Handling

All commands return JSON with success field:

{
  "success": false,
  "error": "Error message"
}

Exit codes:

0 - Success
1 - Error (check JSON for details)

API Endpoint

Base URL: https://api.valyu.ai/v1
Endpoint: /search
Authentication: X-API-Key header

Architecture

scripts/
├── search          # Bash wrapper
└── search.mjs      # Node.js CLI

Direct API calls using Node.js built-in fetch(), zero external dependencies.

Adding to Your Project

If you're building an AI project and want to integrate DrugBank Search directly into your application, use the Valyu SDK:

Python Integration

from valyu import Valyu

client = Valyu(api_key="your-api-key")

response = client.search(
    query="your search query here",
    included_sources=["valyu/valyu-drugbank"],
    max_results=20
)

for result in response["results"]:
    print(f"Title: {result['title']}")
    print(f"URL: {result['url']}")
    print(f"Content: {result['content'][:500]}...")

TypeScript Integration

import { Valyu } from "valyu-js";

const client = new Valyu("your-api-key");

const response = await client.search({
  query: "your search query here",
  includedSources: ["valyu/valyu-drugbank"],
  maxResults: 20
});

response.results.forEach((result) => {
  console.log(`Title: ${result.title}`);
  console.log(`URL: ${result.url}`);
  console.log(`Content: ${result.content.substring(0, 500)}...`);
});

See the Valyu docs for full integration examples and SDK reference.

FAQ

What does the drugbank-search skill do?

Search DrugBank comprehensive drug database with natural language queries. Drug mechanisms, interactions, and safety data powered by Valyu.

How do I install drugbank-search?

Run npx skills add https://github.com/yorkeccak/scientific-skills --skill drugbank-search in your project. The skills CLI detects the agents you use and copies the skill into the right folder. For Claude Code you can also place the skill folder at ~/.claude/skills/drugbank-search/ (personal) or .claude/skills/drugbank-search/ (project).

Which AI agents can use drugbank-search?

Any agent that supports the open Agent Skills format (a folder with a SKILL.md file), including Claude Code, Codex, Cursor, GitHub Copilot, Gemini CLI, Windsurf, Cline, OpenCode and more.

Is drugbank-search safe to install?

No partner security audit is available yet. Skills can run commands and scripts, so read the SKILL.md and any bundled files before installing.

Who maintains drugbank-search?

It is published by yorkeccak in yorkeccak/scientific-skills. It has 132 recorded installs.

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drugbank-search

Install

Install

Describe the task

Review the result

SKILL.md

DrugBank Search

Why This Skill is Powerful

Requirements

CRITICAL: Script Path Resolution

API Key Setup Flow

When to Use This Skill

Output Format

Processing Results

With jq

Common Use Cases

Drug Information

Drug Interactions

Mechanism Research

Target Identification

Error Handling

API Endpoint

Architecture

Adding to Your Project

Python Integration

TypeScript Integration

FAQ

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