MCPInstall

thinking-scientific-method

When a symptom has several plausible causes, rank falsifiable hypotheses and run the cheapest discriminating observation first; prefer least-assumptive survivors only after evidence fit.

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Install

Works with every agent the skills CLI supports.

npx skills add https://github.com/tjboudreaux/cc-thinking-skills --skill thinking-scientific-method
  1. 01

    Install

    Run the command in your project. The CLI asks which agents to install for.

  2. 02

    Describe the task

    Ask your agent for something this skill covers. It loads thinking-scientific-method automatically when relevant.

  3. 03

    Review the result

    The agent follows the SKILL.md steps, scripts and references bundled with the skill.

SKILL.md

The instructions your agent reads when the skill is triggered.

Scientific Method (Hypothesis Differential)

When a symptom could come from several places, enumerate competing falsifiable hypotheses and spend the cheapest observation on the one that best discriminates among them. After each observation, keep only hypotheses that still fit, then prefer the survivor with the fewest unsupported assumptions as the working explanation.

When to Use

  • A bug, incident, or anomaly has more than one plausible cause.
  • You can observe code, logs, diffs, traces, tests, configs, or data now.
  • You must localize the faulty file, function, branch, config, or invariant before fixing.
  • Competing explanations fit the same surface facts and you need a discriminating check.

When NOT to Use

  • Cause is already obvious from a single stack, failing test, or recent diff — fix directly.
  • Only one plausible hypothesis exists — test it; do not invent rivals for ritual.
  • No observation is possible yet — obtain access first; do not speculate a localization.
  • Multi-week experiments, product A/B tests, or policy trials — this skill is for agent-now checks.
  • Fault is already localized and you need systemic root/prevention depth — use five-whys-plus.
  • Selective "only these objects/times" defects better suited to IS/IS-NOT comparison — use Kepner-Tregoe.
  • Representation (doc/dashboard) may be stale versus reality — verify territory with map-territory first, then resume hypotheses.

Procedure

  1. State the symptom precisely. Capture failing behavior, scope, timing, environment, and constraints. Separate observation from interpretation.
  2. Enumerate 2–5 competing hypotheses. Name specific files, functions, configs, input conditions, or invariants. Reject vague buckets ("backend issue"). If no serious alternative remains after a deliberate check, exit this differential and test or fix the sole evidenced cause directly; never fabricate a rival to continue the procedure.
  3. Name falsifiers and cheap observations before looking. For each hypothesis: what result drops it, and what read/grep/diff/log/test check can you run now. Prefer observations available immediately over deploys, canaries, or long waits.
  4. Rank observations by discrimination × cheapness. Run the cheapest check that best separates the top contenders. Do not deep-dive the favorite first if a cheap cross-check would kill alternatives.
  5. Update after each observation. Drop falsified hypotheses. Among survivors that still fit all evidence, prefer the one with the fewest independent unsupported assumptions (extra components, rare timing, external dependencies). Parsimony ranks survivors after fit; it never rescues a leaner hypothesis that evidence already contradicts. Escalate complexity only when simpler survivors are ruled out.
  6. Localize and stop. When one hypothesis has direct supporting evidence and key alternatives are ruled out, name the file/function/config to change and the evidence that localizes it. Stop analyzing once localization is direct.

Output

Symptom: <specific failing behavior, scope, timing>
Hypotheses:
  H1: <specific cause> | Why plausible | Observation | Falsified if
  H2: ...
  H3: ...
Test order: <cheapest discriminating checks>
Results: <what each observation showed>
Survivors: <remaining Hs; least-assumptive working pick among fit>
Localized fault: <file/function/config + supporting evidence>
Ruled out: <Hs dropped and why>

Verification

  • Falsify the differential conclusion if you continued with fewer than two serious hypotheses, if no pre-stated falsifier existed, if a cheaper discriminating check was skipped, or if a "simpler" story was kept after evidence contradicted it.
  • Stop when the fault is directly localized and alternatives that matter are ruled out; do not continue theorizing.
  • Over-application guard: do not narrate observe→question without competing causes; do not treat fewest assumptions as proof; do not run this skill when a single obvious cause is already evidenced.

FAQ

What does the thinking-scientific-method skill do?

When a symptom has several plausible causes, rank falsifiable hypotheses and run the cheapest discriminating observation first; prefer least-assumptive survivors only after evidence fit.

How do I install thinking-scientific-method?

Run npx skills add https://github.com/tjboudreaux/cc-thinking-skills --skill thinking-scientific-method in your project. The skills CLI detects the agents you use and copies the skill into the right folder. For Claude Code you can also place the skill folder at ~/.claude/skills/thinking-scientific-method/ (personal) or .claude/skills/thinking-scientific-method/ (project).

Which AI agents can use thinking-scientific-method?

Any agent that supports the open Agent Skills format (a folder with a SKILL.md file), including Claude Code, Codex, Cursor, GitHub Copilot, Gemini CLI, Windsurf, Cline, OpenCode and more.

Is thinking-scientific-method safe to install?

No partner security audit is available yet. Skills can run commands and scripts, so read the SKILL.md and any bundled files before installing.

Who maintains thinking-scientific-method?

It is published by tjboudreaux in tjboudreaux/cc-thinking-skills. It has 592 recorded installs.

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