MCPInstall

agent-md-refactor

Refactor bloated AGENTS.md, CLAUDE.md, or similar agent instruction files to follow progressive disclosure principles. Splits monolithic files into organized, linked documentation.

Installs
4.2K
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Install

Works with every agent the skills CLI supports.

npx skills add https://github.com/softaworks/agent-toolkit --skill agent-md-refactor
  1. 01

    Install

    Run the command in your project. The CLI asks which agents to install for.

  2. 02

    Describe the task

    Ask your agent for something this skill covers. It loads agent-md-refactor automatically when relevant.

  3. 03

    Review the result

    The agent follows the SKILL.md steps, scripts and references bundled with the skill.

Security audits

Independent scans of the skill's instructions and bundled files.

Gen Agent Trust Hub PassSAFE ·This skill is safe for use. It is a text-processing utility designed to refactor and organize agent instruction files. It does not contain any executable scripts, network access, or sensitive data handling operations.
Socket PassNo alerts
Snyk PassLOW ·Risk: LOW · No issues
Runlayer PassLOW ·1/2 files flagged
ZeroLeaks PassNONE ·Score: 93/100 · 2 sections analyzed

SKILL.md

The instructions your agent reads when the skill is triggered.

Agent MD Refactor

Refactor bloated agent instruction files (AGENTS.md, CLAUDE.md, COPILOT.md, etc.) to follow progressive disclosure principles - keeping essentials at root and organizing the rest into linked, categorized files.


Triggers

Use this skill when:

  • "refactor my AGENTS.md" / "refactor my CLAUDE.md"
  • "split my agent instructions"
  • "organize my CLAUDE.md file"
  • "my AGENTS.md is too long"
  • "progressive disclosure for my instructions"
  • "clean up my agent config"

Quick Reference

PhaseActionOutput
1. AnalyzeFind contradictionsList of conflicts to resolve
2. ExtractIdentify essentialsCore instructions for root file
3. CategorizeGroup remaining instructionsLogical categories
4. StructureCreate file hierarchyRoot + linked files
5. PruneFlag for deletionRedundant/vague instructions

Process

Phase 1: Find Contradictions

Identify any instructions that conflict with each other.

Look for:

  • Contradictory style guidelines (e.g., "use semicolons" vs "no semicolons")
  • Conflicting workflow instructions
  • Incompatible tool preferences
  • Mutually exclusive patterns

For each contradiction found:

## Contradiction Found

**Instruction A:** [quote]
**Instruction B:** [quote]

**Question:** Which should take precedence, or should both be conditional?

Ask the user to resolve before proceeding.


Phase 2: Identify the Essentials

Extract ONLY what belongs in the root agent file. The root should be minimal - information that applies to every single task.

Essential content (keep in root):

CategoryExample
Project descriptionOne sentence: "A React dashboard for analytics"
Package managerOnly if not npm (e.g., "Uses pnpm")
Non-standard commandsCustom build/test/typecheck commands
Critical overridesThings that MUST override defaults
Universal rulesApplies to 100% of tasks

NOT essential (move to linked files):

  • Language-specific conventions
  • Testing guidelines
  • Code style details
  • Framework patterns
  • Documentation standards
  • Git workflow details

Phase 3: Group the Rest

Organize remaining instructions into logical categories.

Common categories:

CategoryContents
typescript.mdTS conventions, type patterns, strict mode rules
testing.mdTest frameworks, coverage, mocking patterns
code-style.mdFormatting, naming, comments, structure
git-workflow.mdCommits, branches, PRs, reviews
architecture.mdPatterns, folder structure, dependencies
api-design.mdREST/GraphQL conventions, error handling
security.mdAuth patterns, input validation, secrets
performance.mdOptimization rules, caching, lazy loading

Grouping rules:

  1. Each file should be self-contained for its topic
  2. Aim for 3-8 files (not too granular, not too broad)
  3. Name files clearly: {topic}.md
  4. Include only actionable instructions

Phase 4: Create the File Structure

Output structure:

project-root/
├── CLAUDE.md (or AGENTS.md)     # Minimal root with links
└── .claude/                      # Or docs/agent-instructions/
    ├── typescript.md
    ├── testing.md
    ├── code-style.md
    ├── git-workflow.md
    └── architecture.md

Root file template:

# Project Name

One-sentence description of the project.

## Quick Reference

- **Package Manager:** pnpm
- **Build:** `pnpm build`
- **Test:** `pnpm test`
- **Typecheck:** `pnpm typecheck`

## Detailed Instructions

For specific guidelines, see:
- [TypeScript Conventions](.claude/typescript.md)
- [Testing Guidelines](.claude/testing.md)
- [Code Style](.claude/code-style.md)
- [Git Workflow](.claude/git-workflow.md)
- [Architecture Patterns](.claude/architecture.md)

Each linked file template:

# {Topic} Guidelines

## Overview
Brief context for when these guidelines apply.

## Rules

### Rule Category 1
- Specific, actionable instruction
- Another specific instruction

### Rule Category 2
- Specific, actionable instruction

## Examples

### Good
\`\`\`typescript
// Example of correct pattern
\`\`\`

### Avoid
\`\`\`typescript
// Example of what not to do
\`\`\`

Phase 5: Flag for Deletion

Identify instructions that should be removed entirely.

Delete if:

CriterionExampleWhy Delete
Redundant"Use TypeScript" (in a .ts project)Agent already knows
Too vague"Write clean code"Not actionable
Overly obvious"Don't introduce bugs"Wastes context
Default behavior"Use descriptive variable names"Standard practice
OutdatedReferences deprecated APIsNo longer applies

Output format:

## Flagged for Deletion

| Instruction | Reason |
|-------------|--------|
| "Write clean, maintainable code" | Too vague to be actionable |
| "Use TypeScript" | Redundant - project is already TS |
| "Don't commit secrets" | Agent already knows this |
| "Follow best practices" | Meaningless without specifics |

Execution Checklist

[ ] Phase 1: All contradictions identified and resolved
[ ] Phase 2: Root file contains ONLY essentials
[ ] Phase 3: All remaining instructions categorized
[ ] Phase 4: File structure created with proper links
[ ] Phase 5: Redundant/vague instructions removed
[ ] Verify: Each linked file is self-contained
[ ] Verify: Root file is under 50 lines
[ ] Verify: All links work correctly

Anti-Patterns

AvoidWhyInstead
Keeping everything in rootBloated, hard to maintainSplit into linked files
Too many categoriesFragmentationConsolidate related topics
Vague instructionsWastes tokens, no valueBe specific or delete
Duplicating defaultsAgent already knowsOnly override when needed
Deep nestingHard to navigateFlat structure with links

Examples

Before (Bloated Root)

# CLAUDE.md

This is a React project.

## Code Style
- Use 2 spaces
- Use semicolons
- Prefer const over let
- Use arrow functions
... (200 more lines)

## Testing
- Use Jest
- Coverage > 80%
... (100 more lines)

## TypeScript
- Enable strict mode
... (150 more lines)

After (Progressive Disclosure)

# CLAUDE.md

React dashboard for real-time analytics visualization.

## Commands
- `pnpm dev` - Start development server
- `pnpm test` - Run tests with coverage
- `pnpm build` - Production build

## Guidelines
- [Code Style](.claude/code-style.md)
- [Testing](.claude/testing.md)
- [TypeScript](.claude/typescript.md)

Verification

After refactoring, verify:

  1. Root file is minimal - Under 50 lines, only universal info
  2. Links work - All referenced files exist
  3. No contradictions - Instructions are consistent
  4. Actionable content - Every instruction is specific
  5. Complete coverage - No instructions were lost (unless flagged for deletion)
  6. Self-contained files - Each linked file stands alone

FAQ

What does the agent-md-refactor skill do?

Refactor bloated AGENTS.md, CLAUDE.md, or similar agent instruction files to follow progressive disclosure principles. Splits monolithic files into organized, linked documentation.

How do I install agent-md-refactor?

Run npx skills add https://github.com/softaworks/agent-toolkit --skill agent-md-refactor in your project. The skills CLI detects the agents you use and copies the skill into the right folder. For Claude Code you can also place the skill folder at ~/.claude/skills/agent-md-refactor/ (personal) or .claude/skills/agent-md-refactor/ (project).

Which AI agents can use agent-md-refactor?

Any agent that supports the open Agent Skills format (a folder with a SKILL.md file), including Claude Code, Codex, Cursor, GitHub Copilot, Gemini CLI, Windsurf, Cline, OpenCode and more.

Is agent-md-refactor safe to install?

Security partners have reviewed it: Gen Agent Trust Hub passed; Socket passed; Snyk passed; Runlayer passed; ZeroLeaks passed. As with any skill, read the SKILL.md and bundled scripts before installing.

Who maintains agent-md-refactor?

It is published by softaworks in softaworks/agent-toolkit. It has 4,229 recorded installs.

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