MCPInstall

root-cause-tracing

Use when errors occur deep in execution and you need to trace back to find the original trigger - systematically traces bugs backward through call stack, adding instrumentation when needed, to identify source of invalid data or incorrect behavior

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Install

Works with every agent the skills CLI supports.

npx skills add https://github.com/neolabhq/context-engineering-kit --skill root-cause-tracing
  1. 01

    Install

    Run the command in your project. The CLI asks which agents to install for.

  2. 02

    Describe the task

    Ask your agent for something this skill covers. It loads root-cause-tracing automatically when relevant.

  3. 03

    Review the result

    The agent follows the SKILL.md steps, scripts and references bundled with the skill.

SKILL.md

The instructions your agent reads when the skill is triggered.

Root Cause Tracing

Overview

Bugs often manifest deep in the call stack (git init in wrong directory, file created in wrong location, database opened with wrong path). Your instinct is to fix where the error appears, but that's treating a symptom.

Core principle: Trace backward through the call chain until you find the original trigger, then fix at the source.

When to Use

digraph when_to_use {
    "Bug appears deep in stack?" [shape=diamond];
    "Can trace backwards?" [shape=diamond];
    "Fix at symptom point" [shape=box];
    "Trace to original trigger" [shape=box];
    "BETTER: Also add defense-in-depth" [shape=box];

    "Bug appears deep in stack?" -> "Can trace backwards?" [label="yes"];
    "Can trace backwards?" -> "Trace to original trigger" [label="yes"];
    "Can trace backwards?" -> "Fix at symptom point" [label="no - dead end"];
    "Trace to original trigger" -> "BETTER: Also add defense-in-depth";
}

Use when:

  • Error happens deep in execution (not at entry point)
  • Stack trace shows long call chain
  • Unclear where invalid data originated
  • Need to find which test/code triggers the problem

The Tracing Process

1. Observe the Symptom

Error: git init failed in /Users/jesse/project/packages/core

2. Find Immediate Cause

What code directly causes this?

await execFileAsync('git', ['init'], { cwd: projectDir });

3. Ask: What Called This?

WorktreeManager.createSessionWorktree(projectDir, sessionId)
  → called by Session.initializeWorkspace()
  → called by Session.create()
  → called by test at Project.create()

4. Keep Tracing Up

What value was passed?

  • projectDir = '' (empty string!)
  • Empty string as cwd resolves to process.cwd()
  • That's the source code directory!

5. Find Original Trigger

Where did empty string come from?

const context = setupCoreTest(); // Returns { tempDir: '' }
Project.create('name', context.tempDir); // Accessed before beforeEach!

Adding Stack Traces

When you can't trace manually, add instrumentation:

// Before the problematic operation
async function gitInit(directory: string) {
  const stack = new Error().stack;
  console.error('DEBUG git init:', {
    directory,
    cwd: process.cwd(),
    nodeEnv: process.env.NODE_ENV,
    stack,
  });

  await execFileAsync('git', ['init'], { cwd: directory });
}

Critical: Use console.error() in tests (not logger - may not show)

Run and capture:

npm test 2>&1 | grep 'DEBUG git init'

Analyze stack traces:

  • Look for test file names
  • Find the line number triggering the call
  • Identify the pattern (same test? same parameter?)

Finding Which Test Causes Pollution

If something appears during tests but you don't know which test:

Use the bisection script: @find-polluter.sh

./find-polluter.sh '.git' 'src/**/*.test.ts'

Runs tests one-by-one, stops at first polluter. See script for usage.

Real Example: Empty projectDir

Symptom: .git created in packages/core/ (source code)

Trace chain:

  1. git init runs in process.cwd() ← empty cwd parameter
  2. WorktreeManager called with empty projectDir
  3. Session.create() passed empty string
  4. Test accessed context.tempDir before beforeEach
  5. setupCoreTest() returns { tempDir: '' } initially

Root cause: Top-level variable initialization accessing empty value

Fix: Made tempDir a getter that throws if accessed before beforeEach

Also added defense-in-depth:

  • Layer 1: Project.create() validates directory
  • Layer 2: WorkspaceManager validates not empty
  • Layer 3: NODE_ENV guard refuses git init outside tmpdir
  • Layer 4: Stack trace logging before git init

Key Principle

digraph principle {
    "Found immediate cause" [shape=ellipse];
    "Can trace one level up?" [shape=diamond];
    "Trace backwards" [shape=box];
    "Is this the source?" [shape=diamond];
    "Fix at source" [shape=box];
    "Add validation at each layer" [shape=box];
    "Bug impossible" [shape=doublecircle];
    "NEVER fix just the symptom" [shape=octagon, style=filled, fillcolor=red, fontcolor=white];

    "Found immediate cause" -> "Can trace one level up?";
    "Can trace one level up?" -> "Trace backwards" [label="yes"];
    "Can trace one level up?" -> "NEVER fix just the symptom" [label="no"];
    "Trace backwards" -> "Is this the source?";
    "Is this the source?" -> "Trace backwards" [label="no - keeps going"];
    "Is this the source?" -> "Fix at source" [label="yes"];
    "Fix at source" -> "Add validation at each layer";
    "Add validation at each layer" -> "Bug impossible";
}

NEVER fix just where the error appears. Trace back to find the original trigger.

Stack Trace Tips

In tests: Use console.error() not logger - logger may be suppressed Before operation: Log before the dangerous operation, not after it fails Include context: Directory, cwd, environment variables, timestamps Capture stack: new Error().stack shows complete call chain

Real-World Impact

From debugging session (2025-10-03):

  • Found root cause through 5-level trace
  • Fixed at source (getter validation)
  • Added 4 layers of defense
  • 1847 tests passed, zero pollution

FAQ

What does the root-cause-tracing skill do?

Use when errors occur deep in execution and you need to trace back to find the original trigger - systematically traces bugs backward through call stack, adding instrumentation when needed, to identify source of invalid data or incorrect behavior

How do I install root-cause-tracing?

Run npx skills add https://github.com/neolabhq/context-engineering-kit --skill root-cause-tracing in your project. The skills CLI detects the agents you use and copies the skill into the right folder. For Claude Code you can also place the skill folder at ~/.claude/skills/root-cause-tracing/ (personal) or .claude/skills/root-cause-tracing/ (project).

Which AI agents can use root-cause-tracing?

Any agent that supports the open Agent Skills format (a folder with a SKILL.md file), including Claude Code, Codex, Cursor, GitHub Copilot, Gemini CLI, Windsurf, Cline, OpenCode and more.

Is root-cause-tracing safe to install?

No partner security audit is available yet. Skills can run commands and scripts, so read the SKILL.md and any bundled files before installing.

Who maintains root-cause-tracing?

It is published by neolabhq in neolabhq/context-engineering-kit. It has 1,294 recorded installs.

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